PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS26465 FitnessBrowser__Cup4G11:RR42_RS26465 (534 amino acids)

SeqID: RR42_RS26465 FitnessBrowser__Cup4G11:RR42_RS26465
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2500934: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS26465 FitnessBrowser__Cup4G11:RR42_RS26465
MTISLANDGAAVRKQGMTREERKVILASSFGALMEWYDFYIYAALAVYFGALFFPPGNET
TAFLASLATFGAGFLVRPVGALLFGRLGDKIGRKHTFLVTILLMGIATVGVGLLPTYGQI
GITATILLVVLRLLQGLALGGEVGGAVTYVAEHSPVEKRGLYTSSLQTTATLGLLSSLLV
VYLLKTLLTEAQFREWGWRLPFLVSFLMLVVSVYIRGKLHESPIFARMKAGNATSKSPIL
DSFTNWANLKYVLLLFVVASGLGAIFGTGHFYTMFFVNKTLHVPLELVHLLIGIALVIAT
PCYLFFGWLSDRIGRKHIMMAACLLAALTTQPIFRALTHYANPALEQFQQRNTVQLRAGD
CHFRLFAEPVSACDKVKGYLTDLGVGYEFTQIDAGAQPALRIGGTTLQGFDKAAIKQALV
AAGWTEHADPAAINRPMLFLMLLIPILLLAMVYGPLAAFMVELFPARIRYTSLSLPFHLG
AGWVGGMLSFVVTAMNVSSGNVYFGLWYPVSIAAIAFVVGMVFVPETRGRNLDT