PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS26650 FitnessBrowser__Cup4G11:RR42_RS26650 (507 amino acids)

SeqID: RR42_RS26650 FitnessBrowser__Cup4G11:RR42_RS26650
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS26650 FitnessBrowser__Cup4G11:RR42_RS26650
MNTAALIRLHANDNVLIARDALSLGQRLPELGLRVRAQVPAGHKIAACAIAKGTQIRKFD
TVIGVAERDIEAGDHVHSHNLALVDFYRDPGFCQDVRPVDYVPEAERATFMGFVRPDGRV
GTRNFIGILSSVNCSATVIRHIADHFTPERMAAYPNVDGVAAFAQSSGCGMSSPSEHFDV
LRRTLAGYARHPNLAGVLIVGLGCERNQVAGLMESQGLVPGSHVRTMVMQDSGGTAATIQ
AGIRAIEAMLPGANTATRQPVPASHLKIGLECGGSDGFSGISANPALGAAMDILVRHGGT
AILSETPEIHGVEYMLTRRAVTPEVGQKLLDRLAWWERYTAGQNAQFNGVVGHGNQQGGL
ANIFEKSLGSAMKGGTTPLQAVYEYAEPIEQSGFVFMDSPGYDPVAATGQIASGANLICF
TTGRGSMFGSKPAPTIKLASNTPMYTRLEGDMDINCGLVLDGELTVDEMGQRIFEHILEA
ASGHPTKSEALGLGDNEFVPWHLGIVS