PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS26670 FitnessBrowser__Cup4G11:RR42_RS26670 (1199 amino acids)

SeqID: RR42_RS26670 FitnessBrowser__Cup4G11:RR42_RS26670
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597208: methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS26670 FitnessBrowser__Cup4G11:RR42_RS26670
MFHTVLIANRGEIAVRAIRTLRALGIKSVAVYSDADRNAAHARLADVAVPLGGERAADSY
LVAERVLQAALDTGAQAVFPGYGFLSESAAFAEACEAAGLVFIGPTPHQLREFGLKHRAR
ELAAEAGVPMTPGTGLLCSLEQALREAARIGYPVMLKSTAGGGGIGLSRCADDAELSAAF
DSVQRLGEQFFKHGGAFIERCLDCARHIEVQIFGDGAGRVVALGERDCSTQRRNQKVVEE
TPAPHLSAATRHALHRAAIRLGESVRYRSAGTVEFIYDVEREDFYFLEVNARLQVEHPVT
ELVTGLDLVACMLKVAAGDALDWEAISRPPQGAAMEARLYAEDPLKQFQPSPGTLTEVAF
ADGVRVDGWVETGTEVSAFYDPLLAKLIVHGPTREAARKRLAAALAATRLGGIATNLDYL
RQIVDSPEFTTGRAFTRMLDHFPYAPAVIEVLEPGTYTSIQDVPGRTGYWHIGVPPSGPM
DDYAFRLANRIVGNHPGAAGLECTLVGPRLRFHGAAVVALAGAPCTATLDGMNVPFWAPI
RVAPGQVLALGKATQGCRTYLAVRNGFDVPVYLGSRSTFALGQFGGHAGRTLRLGDMLPL
GQPHLAASGTCAPVTAPQAAPAALVPVYGQHWEIAVLHGPHGAPDFFTPASMETFFATDW
EVHYNSNRLGVRLVGPRPEWARRDGGAAGLHPSNVHDCEYAIGAINFTGDFPVILTNDGP
SLGGFVCPVTVAKAELWKVGQVKPGDRIRFRPISFDAARAMQAAQDQDIAGLRQITRALP
LPAPARSTAILAGRAASGHHPAIAYRQAGDGYLLLEYGDNVLDIGLRLRVHLLMEALKAQ
PIDGVLELSPGVRSLQVRYDGQRIHQAALIEALLAIEAGLPDVAMLKIPTRVVHLPMAFE
DGATLDAVQRYRETVCADAPWLPNNVDFIQRINGLAHRDEVRDIVFSARYLVLGLGDVYL
GAPCAVPLDPRHRLLTSKYSPARTFTAQGTVGIGGVYMCIYGMDSPGGYQLIGRTLPIWN
RFLKNPAFEPGAPWLLRFFDQVQFYPVSEADLDRLREDFREGRATVRIEHDVFDYGAYRQ
SLAHSAHGIAAFQARQQAAFSAEVAHWKVHEANAAPIQVPAALRHDEHDGHAVTAEMSGS
VWKVLVQPGEQVRAGQPLLVVEAMKMELTVLAPVAGTLLAMRCRAGSAIKVGDRLASIA