PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS26860 FitnessBrowser__Cup4G11:RR42_RS26860 (762 amino acids)

SeqID: RR42_RS26860 FitnessBrowser__Cup4G11:RR42_RS26860
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS26860 FitnessBrowser__Cup4G11:RR42_RS26860
MLSLLALSASLVCSPVLAGTAPAATGDKNAFVADLIGRMTLEEKIGQLRLISIGEDMPQP
QLLKEIAAGRVGGTFNSVTRKDNRPMQQAAVERSRLKIPIFFAYDVVHGHRTIFPISLGL
ASSWDMETVAQSARISAIEASADGLDMTFAPMVDISRDPRWGRTSEGFGEDPYLVSLCAQ
ASVRGFQGTSLANADSVMAVVKHFALYGAVEGGRDYNTVDMSPLRMYQDYLPPYRAGVDA
GGGGVMIALNSINGVPATSNTWLLRDLLRKTWGFKGITVSDHGAIDELTKHGVAKDARES
AKLAITAGVDMSMHDSAYRDHLPELVKSGEVPMRVIDDAVREILGAKYDLGLFQDPFKRI
GAAEQDPADVDAPGRLHREAARAAARQSLVLLENRERTLPLKKSGTVAVVGPLADAPIDT
MGSWSAAGKSGQTVTLLQGVRDALGGNGRVAYARGANVTDDAGVVRYLNFMNWDKPEIVQ
DKRAPGDMIAEAVAAARGADVIVVAVGESRGMSHEASSRTTLSLPGSQETLLKALKTTGK
PMVVVLMNGRPLTINWVKDNADAVLETWYAGTEGGHAIADVLFGDYNPSGKLPVSFPRSL
GQIPTYYNQLRIGRPFVPGQPPNYTSQYFEETSGPLYPFGYGLSYTDFGVSGITLSSPTM
PRGGRIEASVTVKNTGQRDGETVVQLYIQDVAASVVRPVKELKDFHKLMLKAGEERVVRF
SLDEDKLKFFNAKLEYAAEPGEFKVQIGLDSQAVREQGFVLQ