PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS27275 FitnessBrowser__Cup4G11:RR42_RS27275 (255 amino acids)

SeqID: RR42_RS27275 FitnessBrowser__Cup4G11:RR42_RS27275
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599323: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS27275 FitnessBrowser__Cup4G11:RR42_RS27275
MQLPVNAFKQAILADQPQIGLWCSLSSYQVVELVARSQFDWLLLDMEHAPNDISTLHTQL
MATEGARSHPVVRPPWNDMLWIKRCLDIGAQSLLLPYVQNAEEAANAVAWSRFPKGGMRG
VASGTRAGGFGRIKDFLHNVQEQTCVLVQLESMEAIRNVDAICALDGVDGVFIGPSDLSA
DMNHLGDIQHPEVQETIAAAIRRIRANGKAAGILTTEAQGQQYIDMGARFVAVGTDMTLL
RLATDALAARFRQAQ