PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS27420 FitnessBrowser__Cup4G11:RR42_RS27420 (280 amino acids)

SeqID: RR42_RS27420 FitnessBrowser__Cup4G11:RR42_RS27420
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 83305892: Dipeptide transport system permease protein dppC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS27420 FitnessBrowser__Cup4G11:RR42_RS27420
MKNTFWRRFCRNKAAVLGMVVLAGFAVLALFGPWMAGHDPWDMVQQPFLQPMQEPGFAMG
TDTMGRDILAGVIHGARISLLIGVVSTVVSLLIGVTLGAISGYFGGWIDAALMRFTELFQ
AVPSFALALVLVAIFEPSIGSIVAAIAIVSWPPVARLVRSEFLTLRQRDFVQAAKLAGQS
TPRIILSQILPNASSPIVVMASLMVATAILLESSLSFLGLGDPNHMSWGYMVGSARTVLR
QAWWMAVFPGTAILLTVLALNMVGEGLNDALNARLGGSGR