PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS27915 RR42_RS27915 acyl-CoA synthetase (545 amino acids)

SeqID: RR42_RS27915 RR42_RS27915 acyl-CoA synthetase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS27915 RR42_RS27915 acyl-CoA synthetase
MPSDFDTGLGKNPANHVPLTPIDFLARAASVYGDRLAIVHGPVRQNWRDTYARARRLASG
LASLGVGKGDTVAALLPNTPAMVEAHFGVPMAGAVLNALNIRLDASNLIFMLRHGEARVL
LADTEFADVARQIANEIPGLKVVAVLDALGPQDAPAFGETDYERLLASGDPEFAWQMPAD
EWDAIALNYTSGTTGDPKGVVYHHRGAAINAISNILEWDLPKHAVYLWTLPMFHCNGWCF
PWTIAARAGVNVCLRKFEPKLVFDLMRDEGVTHYCAAPIVHTALVNAPLAWRDGVRGPVR
GMVAGAPPPAAVLAQMEAMGFALTHVYGLTETYGPAAVCAEQDDWASLSQEDRATKKARQ
GVRYHLQTEVAVLDPDTMQPVASDGEEIGEIMFRGNICMKGYLKNEKATREAFAGGWFHT
GDLGVCTPDGYVKIKDRSKDIIISGGENISSVEVEDAIYRHPAVLAVAVVAQPDVKWGET
PCAFVELKDGASATADELIAHCRTLLAGFKVPKAVYFGPLPKTSTGKIQKFELRKKVKSD
AAIDV