PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS28230 FitnessBrowser__Cup4G11:RR42_RS28230 (536 amino acids)

SeqID: RR42_RS28230 FitnessBrowser__Cup4G11:RR42_RS28230
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131391: cytoplasmic trehalase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS28230 FitnessBrowser__Cup4G11:RR42_RS28230
MGDPTGGQTLAPHRLAGCAHADPLTPADRYQELFVAVQMGRIFPDSKTFTDAMPRQDPAT
ILAAYRARAGAAGFDLAAFVHAHFALPEVPRSCYESDPNQPLADHIDGLWAVLTRHPAQH
PPQCSLLPLPHPYVVPGGRFSELYYWDSYFTMLGLAASGQGGLLRGMAENFSYLLDTYGV
IPNGTRSYYLSRSQPPVFALMVELFEDQGVQPELGFLPQLRKEYAFWMRGADCLAPGQAC
RRVVRLADGSLLNRYWDERDTPREEAFIEDTGTAALAARPAAEVFRDLRAAAESGWDFSS
RWQEPGGGLETVRTTAILPVDLNCLLFKLEHKLAELAQAAGDADAPVFAQRAQARREAID
RLMWREAEGAYFDFDWQRHHARANLTAATVVPLYVGAATPAQAARVAQTVAARLLQPGGI
ATTERVSGQQWDLPNGWAPLQWLAIGGFACCGQAALAHEIAHRWLVTVASLYQREYKLVE
KYALQPGEDGAVGGGGGEYPLQDGFGWTNGVVRRLLQDHPAHVACRCRAGVKSVHP