PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS28450 FitnessBrowser__Cup4G11:RR42_RS28450 (457 amino acids)

SeqID: RR42_RS28450 FitnessBrowser__Cup4G11:RR42_RS28450
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598553: D-serine dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS28450 FitnessBrowser__Cup4G11:RR42_RS28450
MNQPLAMNPSTAAGPHAAAALRASLAAATPLLWCNPARAVTPPPVQAAGEHSISLADVEA
AQARFARFAPLLSALFPELAGTHGVIESPLVAVPSMQTALGLPHSQGRLWVKADHSLPVA
GSIKARGGIHEVLEFAENLALRHGLVGPGRNEPEHYLALREPAARALFGRYQVAVGSTGN
LGLSIGVMASALGFRAAVHMSSDAKAWKKARLRNRGVEVVEHAGDYEDAVAAGRRQAQQD
EFTYFVDDERSLSLLLGYSAAALHLRQQLAAHAIRVDAEHPLFVYLPCGVGGAPAGITFG
MRQLFGPHVHCVFAEPVQSPCFLVQMMAGAGNPSVYDFGLSNSTQADGLAVPRASELAAG
VMRPLLSGVFTVADDTLFEHLALAWRTQGLRIEPSAAAGFSGPRMLCESPAGRDYLARHQ
LEAMMPQATHLVWTTGGLFVPPAEYQGFLDKAAALAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory