PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS29090 FitnessBrowser__Cup4G11:RR42_RS29090 (512 amino acids)

SeqID: RR42_RS29090 FitnessBrowser__Cup4G11:RR42_RS29090
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS29090 FitnessBrowser__Cup4G11:RR42_RS29090
MQGTALYIRIHALDNVAIVANDGGLPEGTVFPCGLTLRERVPQGHKVALVDLAAGDAVVR
YNVVIGYALRDLPKGSWVNERVIEMPVAPGLDNLPVGTRVAEPLPPLEGYSFEGFRNPDG
SVGTRNILAITTTVQCVSGVVEHAVRRIRAELLPQYPNVDDVVGLEHTYGCGVAIDAPDA
IVPIRTLRNIALNPNFGGTAMMVSLGCEKLQPERLLPAGSLPGGLDVGVVCLQDDEHVGF
ESMIDSIMAMAHTHLARLDQRRRETCPASELVVGVQCGGSDAFSGVTANPAVGFATDLLV
RAGATVMFSEVTEVRDGIDQLTARAATPEVAQAMIREMDWYDRYLEKGRVDRSANTTPGN
KKGGLSNIVEKAMGSIVKSGSTAITGVLSPGEKLKQKGLIYAATPASDFICGTLQLAAGM
NLHVFTTGRGTPYGLAEVPVIKVATRSDLARRWHDLMDVNAGRIATGEATIEDVGWELFR
LMLDVASGRKKTWAEHHKLHNSLVLFNPAPVT