PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS29455 RR42_RS29455 ABC transporter ATP-binding protein (261 amino acids)

SeqID: RR42_RS29455 RR42_RS29455 ABC transporter ATP-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 71164840: Cytoplasmic membrane associated cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    6.29
    Cytoplasmic            3.70
    Periplasmic            0.01
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS29455 RR42_RS29455 ABC transporter ATP-binding protein
MREIQHAPVLALANVESAYGPVKAIRGVSLAVQRGSIATVLGANGAGKTTILKTISGVLD
PTRGSITFKGESIAAMDPAQIVRRGLSHVPEGREVFPLLSVRDNLLMGAYTRRDRDGVAR
DMEMVYDYFPVLRERAAQDAGLLSGGQQQMLAISRALMAAPELILLDEPSLGLSPKLTKD
IFEIVVRINRERGTTILLVEQNANMALNAADYGYVLENGRIVAEDTCAVLREKDDIKEFY
LGMKDNGVRGERRWKKRKTWR