PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS29650 FitnessBrowser__Cup4G11:RR42_RS29650 (229 amino acids)

SeqID: RR42_RS29650 FitnessBrowser__Cup4G11:RR42_RS29650
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 123175: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS29650 FitnessBrowser__Cup4G11:RR42_RS29650
MFLYGFGPLLLAGTIRTIELSLLSLATAIVLGLLGATAKLSFNRPLRELGRCYTTLIRSV
PDLVLMLLLFYSIQIGINNLTDAVGLPQFDIDPFVAGVLTLGFIYGAYFTETFRGAFLSV
PRGQLEAGAAYGMNGTLVFRRILFPQMMRFAIPGIGNNWQVLVKATALVSIIGLADIVKA
AQDAGKSTFKMFFFILCAAFIYLVITTFSNLVLAWLAKHYSSGVRHAEL