PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS30610 FitnessBrowser__Cup4G11:RR42_RS30610 (405 amino acids)

SeqID: RR42_RS30610 FitnessBrowser__Cup4G11:RR42_RS30610
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 585479: Cystathionine beta-lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS30610 FitnessBrowser__Cup4G11:RR42_RS30610
MKPSILTHLAHAGRASAVDGGQPVNPPVVRASTVLFDSVAQMREMRSRRGSERLFTYGAR
GNPTAFALEDMVTELEAGYRTRLFPSGLAAAAMTLLAYLRPGQHVLLPDCVYEPVRKLAE
GFLAQHGIAASFYAADGHDLQARLRRETRLVYVEAPGSLAYEMCDLPAIADIAHRHGALV
AADNTWGSGLLYQPLALGADISLMAATKYLSGHSDVMMGTVCTLEAAWPALAAVADAFGI
SVSPDDAYLVQRGMRSLGARLSQHERSALAVAHWLRTRPEVAEVFCPALPGDPGHALWQR
DCHGTNGLLSFALRAVAPDAAERFIDSLALFGIGASWGGFESLAVIADMRGARSVTDWSG
RGQVIRLHIGLEDVDDLLADLARGFEVIGGGRVAGRALEARLDTA