PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS30660 FitnessBrowser__Cup4G11:RR42_RS30660 (795 amino acids)

SeqID: RR42_RS30660 FitnessBrowser__Cup4G11:RR42_RS30660
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS30660 FitnessBrowser__Cup4G11:RR42_RS30660
MARTHIAGFPRIGAQRELKFAQEAFWRGETDEASLRQVATGLRQRHWQSQAQAGLDSVAV
GDFAYYDQVLGLSALLGALPARFGFDPKQLSLAQYFELARGNKAQPAMEMTKWFDTNYHY
LVPELGPDTRFDGGVDWFFDEVEEALALGLKAKPVLIGPVTYLWLSKTHVDGFDRLSLLP
SLVAAYGRILARLRDRGIEWVQIDEPALCLDLEPAWLDAYDGAYAELAKSGVKLLLATYF
DNAADHAARAAALPVHGFHIDLVRAPQQLDAWRKVLPAGAVLSAGVIDGRNIWRTDLRRA
LSVLAPLHAELGERLWVAPSCSLLHVPVSLEAERKLDAQIKTWLAFATEKLAEVSVLARA
LNEGEAAVAPELAAADAALASRRSSSRVVNQQVQARVAAVTAAMAQRKSPFQTRIERQRT
ALQLPALPTTTIGSFPQTTAIRQTRAAYRRGEIGALEYLQRIRGEIETAVRKQEALGLDV
LVHGEAERNDMVEYFGEQLCGYTFTENGWVQSYGSRCVKPPVIYGDVYRPEPMTVETTRY
AQSLTERPMKGMLTGPVTMLQWSFVRDDQPRATTTLQLALAIRDEVSDLEQAGIRIIQID
EPALREGLPLRKGDWAAYLDWAVHAFKISAASVEDQTQIHTHMCYAEFNDILPAIAALDA
DVITIETSRSAMELLEGFGEFDYPNEIGPGVYDIHSPRVPSVEAITHLLERACEVIPPQR
LWVNPDCGLKTRAWPETEAALANMVAAARGLREQIGKDGATAWQRATRRTGLGGHAAHHG
AAHAAGCVDCASQAA