PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS31070 FitnessBrowser__Cup4G11:RR42_RS31070 (576 amino acids)

SeqID: RR42_RS31070 FitnessBrowser__Cup4G11:RR42_RS31070
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS31070 FitnessBrowser__Cup4G11:RR42_RS31070
PAQDAENGLGKGLTNYGDKGFSLFLRKAFIKGAGYTDDALSRPVIGIVNTNSSYNPCHGN
APQLVEAVKRGVMLAGGLPVDFPTISVHESFSAPTSMYLRNLMSMDTEEMIRAQPMDAVV
LIGGCDKTVPAQLMGAASAGVPAIQLVTGSMLTGSHRGERVGACTDCRRYWGRYRAEEID
APEIADVNNQLVASVGTCSVMGTASTMACLTEALGMMVAGGASAPAVTADRVRVAERTGT
TAVAMARSGLTPERILTGRAIENAIRVLLAIGGSTNGIVHLTAIAGRLGIGIDLAGLDRM
SRETPVLVDLKPSGQHYMEDFHAAGGMPALLRELRPLLHLDTLTVSGRTLGEELDAAPAP
FAQEVIRPFDAPIYPVGGLAVLRGNLAPGGAIIKQSAADPVLMEHEGRAVVFEDAEDMAL
RIDDDALDVKADDILVLKRIGPTGAPGMPEAGYMPIPRKLARAGVKDMVRISDGRMSGTA
AGTIVLHVTPEAAIGGPLAHVRNGDRIRLSVARREISLLIDDAELARRAAEHEVVRPAAE
RGYRKLFLATVTQADQGVDFDFLRAARTSETVPRKS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory