PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS31785 FitnessBrowser__Cup4G11:RR42_RS31785 (849 amino acids)

SeqID: RR42_RS31785 FitnessBrowser__Cup4G11:RR42_RS31785
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131244: nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS31785 FitnessBrowser__Cup4G11:RR42_RS31785
MKLIIIGHGMVGHKFLECLAEAGSQDLEVTVLCEEPRPAYDRVHLSEFFAGKSAEDLSLV
EAGFFERSNMLLRLNARATGIDRAAKTVTVSTGETLSYDKLIMATGSYPFVPPLPGKDRK
DCFVYRTIEDLEAMQECGARSRTGVVIGGGLLGLECAKALRDMGLQTHVVEFAPRLMAVQ
VDDGGGAMLRRKIEELGVTAHTRKNTVEIVDGEDGTHRMNFADGSHLDTDMIVFSAGIRP
RDELARASGLAIGERGGIAVDNQCLSSDPDVYAIGECALWDGKIYGLVAPGYEMARVAAK
HLLGHRAEFAGADMSTKLKLMGVDVASLGDPHGNAPGSRSFQFTDERKQVYKKLVVSECG
KYLLGGVLVGDAEEYGTLLQMMLNKIELPESPEFLILPSSDGQAKPGLGADALPDSAQIC
SCNNVTKGDICAAVCSGTTNIGDMKRCTKAGSTCGGCVPLVTQVMKAEMKKQGLAVNNHL
CEHFAYSRQELYHLVRVGGFKTFGELLAAHGKGLGCDVCKPTVASILASCWNEFVLKQEH
ASLQDSNDYFLGNIQKDGTYSVVPRMPGGEVTPDGLIAVGQVAKKYGLYTKITGGARVDM
FGARVEELPMIWEELIAAGFESGHAYGKSLRTVKSCVGSTWCRYGVDDSVGLAIEIENRY
KGLRAPHKIKFGVSGCTRECAEAQGKDVGIIATERGWNLYVCGNGGMKPRHAELLASDLD
RATLLRYVDRFLMFYVRTADRLQRTSVWRDNMEGGLDYLKAVVLDDSLGIGAELEAQMQH
VVDTYEDEWKAAVTNPETRKRFRHFVNSDLRDDNLVFMEERGQIRPATPEERNLRKSRLE
QIPVIVKAA