PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS32610 FitnessBrowser__Cup4G11:RR42_RS32610 (424 amino acids)

SeqID: RR42_RS32610 FitnessBrowser__Cup4G11:RR42_RS32610
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2500947: Cystathionine gamma-synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS32610 FitnessBrowser__Cup4G11:RR42_RS32610
MKIETIAVHGGYSPDPTTRAVAVPIYQTVAYAFDNAQHGADLFDLKVPGNIYSRIMNPTN
DVLEQRLAALEGGVGALALASGMAAITYAIQTIAEAGDNIISASQLYGGTYNLFAHTLPL
SGIETRFADGRNPAAFGDLVDARTKAIFVESVGNPLGNIVDIEAIAKVAHSHGIPLIVDN
TVPSPYLCRPFEHGADIVVHSLTKYLGGHGNSVGGAIVDSGKFPWAEHKARFKRLNEPDV
SYHGVVYTEALGAAAYIGRARVVPLRNTGAALSPFNAFLILQGIETLALRLDRITENALA
VARHLKASPKVEWVNFAGLPEHPDHALVQRYLGGRGPGILSFGLKSGGREAGARFLDALQ
LFTRLVNIGDAKSLATHPASTTHRQLDAAELKAAGVSEDMVRLSIGIEHIDDLLEDLERA
LAAA