PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS33640 FitnessBrowser__Cup4G11:RR42_RS33640 (447 amino acids)

SeqID: RR42_RS33640 FitnessBrowser__Cup4G11:RR42_RS33640
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        OuterMembrane                 [matched 37538304: NAD-specific glutamate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    OuterMembrane          4.74
    Cytoplasmic            4.28
    Periplasmic            0.37
    Extracellular          0.37
    CytoplasmicMembrane    0.24
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS33640 FitnessBrowser__Cup4G11:RR42_RS33640
MTSASLETFLAGVARRDPDQPEFLQAVKEVMMTLWPFVEQHPRYGEQALLERLVEPERVI
QFRVAWTDDRGQVQVNRGFRVQHSSAIGPYKGGMRLHPTVNLSVLKFLGFEQTLKNALTT
LPMGGGKGGSDFDPKGKSDGEVMRFCQALMTELYRHLGPDTDVPAGDIGVGAREVGFMAG
MMKKLSNSSASVFTGKGMAFGGSLMRPEATGYGTVYFAQEMLHRRGRDFSGLRVLLSGSG
NVAQYAAEKAIELGAKVLTVSDSGGVLHYPKGMNSEQLSALMAFKNEARGRLAEFAAEQD
LHFEAGRTPWHVPADVALPCATQNELDGNDAERLLANGVFCVAEGANMPATLDAVDRFLA
ARILYAPGKASNAGGVATSGLEMSQNAMRMSWHHAEVDEKLHAIMKDIHGNCIHYGQKAD
GFINYVEGANVAGFVKVADAMLAQGVV