PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS33965 FitnessBrowser__Cup4G11:RR42_RS33965 (653 amino acids)

SeqID: RR42_RS33965 FitnessBrowser__Cup4G11:RR42_RS33965
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS33965 FitnessBrowser__Cup4G11:RR42_RS33965
MEATIRFDGRVLYLSQDPACVRAQLDGKPMTRAEAGPLRDNISTDEITPVTIMLTYDERL
GQFPYVGFQAGGEQPIGRDAIRNGGFAVTVAGKRYGKGSSRESSPLAELSAGIRLIVAES
FERIYQQNCDNIGILTTTDFTVLDRVLAGEAIPIEAFLAGRDALTRQVIRAGGLLAYSRA
ASWPAAGEGAQATQATGSAAPRTLVEKIIARHLLPGTPSAECGQGVFVAADWRFSHDYFT
GMCAHLMHRAFGKPATLREPDHIIAFQDHLVLAAQSFPHVRDGLLPGVANLMQGHSSFAH
DYPVRSHNALPGDVPGSEGICHALMAEQYALPGQVVVGTDSHTPHSGALGCLAFGAGATD
VANSWVTGYVRCKVPETLRVEVEGELAPGVSAKDIVLYLLQMDAIRSGGAIGVVFEYAGS
TVRALSIDERATLTNMVAELGGFTGIVEPDDKTVAFLKARRGVDFAIEDWMRSDAGATYR
DVIRIDAAAIAPMVARPGDPGNGIAANTLAQPVPVDIAYGGSCTAGKREDFDYYHEVLRW
GLEHGLKVSPRTRLFLQFGTLGVKAYCEARGYMDTFAAAGATLVMPGCGSCANCGPGAST
TSEQVTISAINRNFPGRSGPGQVWLASPYTVAASALAGQISTFGQLQASCAAP