PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS36985 FitnessBrowser__Cup4G11:RR42_RS36985 (270 amino acids)

SeqID: RR42_RS36985 FitnessBrowser__Cup4G11:RR42_RS36985
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597400: probable binding protein component of ABC transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

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Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS36985 FitnessBrowser__Cup4G11:RR42_RS36985
MFKAALTLLTGLTVLASSPAMADRLDDIKKAGVLRVGVFDANPPFGFVEAGSITPVGLDV
DYAAEIAKRLGVKPEFRATNPANRIALLASQKADIVAANFTITDERRQQIGFSTPYFASG
LQFIARKGALKQADDLKAWRLGVDKGTTQETTLRQKYPDARVIAYDDSPLALSALRSGAI
QAFAQDGAKLGALLATLPNKDQFEISSFTLTREYMGVGVPKGEDRLTAEIDRILAGLEKD
GTAARIYDKWFGPKSTAPLARDFTIGSALK