PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20295 FitnessBrowser__Smeli:SM_b20295 (323 amino acids)

SeqID: SM_b20295 FitnessBrowser__Smeli:SM_b20295
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 586718: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20295 FitnessBrowser__Smeli:SM_b20295
MKTGMISLALAGLLMASQAMAQEARTLRLGMQGTAGDPQFEGVTEAARIIKEKSGGRLTL
EIFPNSQLGTFTEMMEQVTLGELDFTLNPFGGMDAWVPRAVLASTAYVVGDFDHLQKIIA
SDWGKGIVDEMRTEHKWRMVDSWYFGTRHTTAKKPIEKPADFAGMKLRVPNSAPLLTWAK
AMGASPTPVAFAEVYLALQTNQVDGQENPLPIIDSMKFTEVQSHVSLTGHLVQDQVILMS
EDTWNALEPADQKVVMEAFEAGGALNDKLVSDKEANLVSDFRERGITVVEPDKAAFQEAM
KPVYADLDAKFGADTVKTLLDLR