PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20583 FitnessBrowser__Smeli:SM_b20583 (390 amino acids)

SeqID: SM_b20583 FitnessBrowser__Smeli:SM_b20583
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595444: p-hydroxybenzoate hydroxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20583 FitnessBrowser__Smeli:SM_b20583
MRTQVVIIGSGPSGLLLGQLLTEAGIANVILDRATKAHILGRVRAGVLEQGTVRLMEEAG
CGARMHAEGLPHDGFSLAFDGRDHRIDLFGLTGGRRVMIYGQTELTRDLMDHRERVGALS
IYEAANVMPRDFDGRTPHVAYEKDGIAQRIDCDFIAGCDGFHGVSRRSLPEKAIRNFEKI
YPFGWLGILADVPPVDHELVYANHPRGFALCSMRSHTRSRYYIQCPLEEKIEDWDDQRFW
DELRRRLPAHHAERVVTGPSFEKSIAPLRSFVAEPMRFNRLFLAGDAAHIVPPTGAKGLN
LAASDVHYLFEGLLEHYQDRSNAGIDAYSARALARVWKAVRFSWWMTTMLHRFPETSDFD
QRIQEAELDYLTHSRAAATALAENYVGLPF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory