PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20749 FitnessBrowser__Smeli:SM_b20749 (487 amino acids)

SeqID: SM_b20749 FitnessBrowser__Smeli:SM_b20749
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61252084: Polyol:NADP oxidoreductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20749 FitnessBrowser__Smeli:SM_b20749
MRLSRKTIDRLPRTVKRPHYDLGTVTVGIVHLGIGAFHRAHQAVYTDGLLSEDPSWGICG
VSLRSPETRDALHPQDGLYTLAVQDGEGSELSVVGSVVELLCAPDDPEAVLRRMADPGTR
IVSLTITEKGYCHNPATGTLDEGHPDIVHDLANPARPRSAIGFIVEAISRRVSAGIAPFT
LLSCDNLPGNGHVLKRIVTQFAEARDPALAAVVRNVASPSTMVDRIVPATTDSDRSAVAS
AMGLEDAWPIMTEPFRQWVIEEDFPLGRPAWEKAGALFVQDVSAFEFMKLRLLNGSHSTL
AYLGYLAGAETVADAMALAGMEALVEGLMRHEVSPTLPELPGFDLPAYRAELLQRFRNPA
LRHRTWQIAMDGSQKLPQRLLGSIRDRLQAGAGYDRLALGVAAWMRYARGLDEAGRPIDV
RDPHAARIAGLARGIDEPDRIVDAFLTMTDVFGTDLPASAPFRAALIKALDGLLRIGAAA
TLRRFRR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory