PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20755 SM_b20755 propionyl-CoA carboxylase subunit beta (510 amino acids)

SeqID: SM_b20755 SM_b20755 propionyl-CoA carboxylase subunit beta
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20755 SM_b20755 propionyl-CoA carboxylase subunit beta
MRAVLEQVEARRAEARAGGGERRIAAQHGKGKLTARERIDVLLDEGSFEEYDMYVTHRSV
DFGMAGQKIPGDGVVTGWGTINGRQVYVFSQDFTVLGGSLSETHAQKICKIMDMAARNGA
PVIGLNDSGGARIQEGVASLAGYAEVFRRNAEVSGVIPQISVIMGPCAGGAVYSPAMTDF
IFMVRDSSYMFVTGPDVVKTVTNEIVTAEELGGARTHTTKSSVADGAYENDIEALEHVRL
LFDFLPLNNREKPPVRPFHDDPGRLEMRLDSLIPDSAAKPYDMKELILAIADEADFFELQ
ASFARNIITGFIRIEGQTVGVIANQPMVLAGCLDIDSSRKAARFVRFCDAFSIPILTLVD
VPGFLPGTAQEYGGVIKHGAKLLFAYSQATVPMVTLITRKAYGGAYDVMASKHIGADVNY
AWPTAEIAVMGAKGATEILYRSELGDPAKIAARTKEYEERFANPFVAAERGFIDEVIMPH
SSRRRIARAFASLRNKQVETRWRKHDTIPL