PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b21345 FitnessBrowser__Smeli:SM_b21345 (327 amino acids)

SeqID: SM_b21345 FitnessBrowser__Smeli:SM_b21345
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 732294: ABC transporter periplasmic-binding protein ytfQ precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b21345 FitnessBrowser__Smeli:SM_b21345
MNRISRRAFMLAATAAGAIAIAGTVAFAELPKLAQKETYKVGFAQTESNNPWRIAQTNSM
KAEAEKLGHQLVYTDAAGSAAKQVADVNSMIAQGVDLIFLAPREEKPLIPAVMAAKKAGI
PVILLDRSVDPSLAKAGEDYVTFIGSDFIEEGKRIAEWLVKNANGKSKIIELEGTTGSSP
ANDRKKGFDETIKAAGGFEIVASQSGDFARDKGRQVAEALLQAHPDADIVYAHNDEMAIG
AIAAIEAAGKVPGKDVLVLSIDGGKEAVQAVIDGKIAAVVECNPRFGPKAFETMLRYAKG
EKIDPMVINEDKFYDSSNAAAELANAY