PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0058 FitnessBrowser__Smeli:SMa0058 (398 amino acids)

SeqID: SMa0058 FitnessBrowser__Smeli:SMa0058
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0058 FitnessBrowser__Smeli:SMa0058
MKPIPDFRSKDFLLAHMREIMDFYHPICLNEEDGGYYNEYRDDGFITDRKTQHLVSTTRF
IFNYATAAVLFERPDFAEAAAHGVRYLDEVHRDPEHGGYYWLMRGRDAVDATKHCYGHAF
VLLAYATAMKAGIPGTGARVSQTWDLLENRFWEPDRELYKDEVSRDWGATSPYRGQNANM
HMTEAMLAAYEATGEIRYLDRAETLARRICVELAANTQDVVWEHYRQDWSVDWDYNKDDP
KHLFRPYGYQPGHMTEWTKLLLILERYRPQDWLLPKALLLYETALAKSADLEFGGMHYSY
GPEGKLYDLDKYHWVHCETIAAAAALAGRTGRERYWQDYDRLWRYSWRHLIDHEYGCWFR
ILSPDGVKQSDIKSPSGKTDYHPFGACYEILRVLGEAQ