PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0072 FitnessBrowser__Smeli:SMa0072 (243 amino acids)

SeqID: SMa0072 FitnessBrowser__Smeli:SMa0072
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 132119: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0072 FitnessBrowser__Smeli:SMa0072
MTTPIIECRNLQKWYSGVHALKNVDLTIHPGETVGLVGDNGAGKSTLIKILSGVHHQDSG
DVLIEGRRVALRSPKDAMRYGLETIYQYNSMVPTMSIARNLFIGREPMKWSVFGVGIMDQ
KRMRVESIQAIADVDLHLRSPDALVGELSGGQRQGVAIARAMHFKSKVLILDEPTNHLSV
KETDKVIGFVRGLKAQGLTGIFISHNMQHVFQSCDRIVAMARGEIVFDKPTADTSIDEVH
ALL