PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0217 FitnessBrowser__Smeli:SMa0217 (359 amino acids)

SeqID: SMa0217 FitnessBrowser__Smeli:SMa0217
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141728: Ribose transport system permease protein rbsC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0217 FitnessBrowser__Smeli:SMa0217
MGARRRARPVPRSPTIECQTVTPVLAESAAPRSRTQRQSILKQIMGMPAGAIFLVFMTLQ
IVCIAGALLYPDEFRYLSPQNLTILMKAIPVLGCLALGAGVLMIAGEFDLSIGSVYTFTA
VLMASLVNAGLSAFIAAPIAILTGLLIGSLNGHITLRFGLPSFIVTLGGLLFWRGAVLLY
NGAVQVRFDPEPVFTSLFSGTLFGVNAAFIWIVLFVTGFHLLLHRHRFGNHVFATGGNRG
AAEAIGINTSRVKLIAFAIAGGMAAVAGILATARVGSVQPGQGAGLELQAIAACVIGGLS
LRGGRGSIIGIFLGVLLIHTITDVLLLLRAPGFYLDMFIATLIVLAAIFNHLIERRGLA