PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa2127 FitnessBrowser__Smeli:SMa2127 (516 amino acids)

SeqID: SMa2127 FitnessBrowser__Smeli:SMa2127
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6166548: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa2127 FitnessBrowser__Smeli:SMa2127
MENLLSVQNLTKRFGAVTANDSVDLDVRKGEIHCLFGENGAGKSTLSACLYGYYRADSGV
IRFKGQVAELNSPADALRLGIGMVHQHFVLVENFTVLENIIVGSPDVGMLLSKSTARQKV
EDLCLRCGIELDLDREIWQLSVGEQQWVEILKALYFGAELLILDEPTAVLTPQQSDQLFV
ILDGMRRQGLSIILISHKLREVMQSDRVTILRKGKVVATVETATTTAESITALMVGHQVT
KRVSDRSVAPGREVLVVDHAVAIGEWGEEVLCDINFTIAENEILGLAGVAGNGQKELFEV
LMGVRTLSSGRFHLNGEAIVAPTSREMLDRGVGLVPDDRFREGLISEFGTAENLVLGWQR
KPEYRRGPFLDRGKINDLAQRKLEEFRIVAASTDLPVERLSGGNAQRVILAREFLNAKCL
LLANQPTRGLDVAASEFVYEKILEKRAEGFAVFLASEELDDLLRLCDRIAVIFKGKIVGT
VRPEETTLLELGMMMAGNASNLGGQVNDFGSKALRQ