PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa2139 SMa2139 SgaA serine-glyoxylate aminotransferase (SGAT) (401 amino acids)

SeqID: SMa2139 SMa2139 SgaA serine-glyoxylate aminotransferase (SGAT)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118627: Soluble hydrogenase, small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa2139 SMa2139 SgaA serine-glyoxylate aminotransferase (SGAT)
MRNGTSHLFVPGPTNIPDAVRRAMNVPMQDMRAPDFPDLVLPLFADLKGVFRTDNGSIFL
FPGSGTGAWEAAISNTLNRGDRVLMSRFGQFSHLWADMAGRLGLDVECLDVEWGEGVPVE
EYRRRLDADKNRRIKAVFVTHNETATGVTSDVAAVRAALDDTGHKALLFVDGVSSIASIE
FRMDDWGVDLAVTGSQKGLMLPAGLGILAVSPKALEAHASSTIERCYFSFEDMKAPSETG
YFPYTPPTQLLLGLRASLDLIFAEGLDAVIARHHRLAEGVRRGVHAWGLNLCATEKKWWS
DTVSAIVVPEDVDARQVIANGYSKYRTSFGAGLSKVAGRVFRIGHLGDLNEVMCLSALAA
AEMSLRDAGAKIEAGSGVAAAQEWYRSQIGLAAPNLQERAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory