PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00086 SMc00086 diheme cytochrome C-type signal peptide protein (304 amino acids)

SeqID: SMc00086 SMc00086 diheme cytochrome C-type signal peptide protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2493995: Diheme cytochrome c-type]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00086 SMc00086 diheme cytochrome C-type signal peptide protein
MGRRARYLLSGLVLLVVAGASLAWWLTKPDRWDAAHWEGLGGPDLANGEQIFWAGGCVSC
HSAPGAKDDQRLVLTGGRTLKSPFGTFYPPNISPDETVGIGNWTLAEFGDAMTRGVGKDG
EHLYPSFPYGSYIRMTAKDVNDLWGFMQTLPKSSNATPPHDLAFPYNVRLALGAWKLLYL
SDEPRTQVNTADTKLARGQYLVEGPGHCGECHTPRDALGGFEEDRWLAGAPNPEGEGRIP
DITPSSKSIGDWSASDIASYLETGFTPDFDTVGGSMVEVQKNMAELPASDRDAIAAYLKA
LPAL