PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00265 FitnessBrowser__Smeli:SMc00265 (336 amino acids)

SeqID: SMc00265 FitnessBrowser__Smeli:SMc00265
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 585039: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00265 FitnessBrowser__Smeli:SMc00265
MKMTRRTMLLGTGAVALGASIRTKAHAADFTYKLANNLPVTHPLNIRLKEAADKILEETG
GRLKINIFPSSQLGNDTETLSQLRNGATEFFSLSPLILSTLVPNAAISGIGFAFPDYDTV
WKAMDGELGAYARGEIEKKGLVPMEKIWDNGFRQITSSNKPINTPEDLKGFKIRVPPSPL
WQSMFTAFGAAPTTINFAEVYTALSTGTVDGQENPLAIASTAKLYEVQKHCAMTNHMWDG
FWMLANKQAWETLPEDIREIAAKHLNESAIAQRTDTAKVNDTVREQLTQSGMTFTDPDKA
AFRETLRSAGFYAEWKGKFGDEAWAILEKAVGTSLG