PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00476 FitnessBrowser__Smeli:SMc00476 (551 amino acids)

SeqID: SMc00476 FitnessBrowser__Smeli:SMc00476
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027906: Putative sulfate transporter ychM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00476 FitnessBrowser__Smeli:SMc00476
MPDSLVPKTVSILAEGYGAARLKADAFAGLTVAIVALPLSMAIAIASGVTPDRGLYTAIV
GGFLVSLLGGSRVQIGGPAGAFIVLVAATVARHGVDGLLLATLMSGFMLIAAGYLRLGRY
IKFIPYPVTVGFTAGIAVIIFASQLRDLFGLTLAGAEPGPIVDKVAALAQAAGTVSWAAV
LTAALTVGIILALRRVRPHWPGMLIAVAAASTFVALLQLPTETIGSRFGGIPRGLPLPAL
PPLSLEKAAAVFPDALSFALLGAIESLLSAVVADGMTGRRHRSSVELVAQGAANICSALF
GGICVTGTIARTATNVRAGATSPVSGILHSAFLLLFMLLAAPLASYIPLASLAGVLAIVA
WNMIEKPAFMALLRSSYGDAVVLLATFLIVVFRELTEGIVVGFALGAVLFIDRMARSISV
QEARPLSAQRQENGDERPVIADDPDTVIYRLSGIFFFGSAATVGTVLDRIADQRRNFILD
CSDVPFMDSTAANVIEGTLRKAERTGVRFIITGARSQVRRALYQHHVRPPRVMMRASVAA
ALDTIRTERVP