PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00725 FitnessBrowser__Smeli:SMc00725 (467 amino acids)

SeqID: SMc00725 FitnessBrowser__Smeli:SMc00725
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600456: argininosuccinate lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00725 FitnessBrowser__Smeli:SMc00725
MADGSSETKSSNQMWGGRFASGPDAIMEEINASIGFDKKLYAQDIRGSIAHATMLAHQGI
ISAEDKDKIVHGLDTILSEIDSGAFEFSRRLEDIHMNIEARLAALIGPAAGRLHTARSRN
DQVALDFRLWVKEELQKTEKALTGLIAAFLDRAEEHAETVMPGFTHLQTAQPVTFGHHCM
AYVEMFGRDRARVRHAIEHMDESPIGAAALAGTGFPIDRHMTAKALGFREPTRNSIDTVS
DRDFALEFLSIAAIAATHLSRLAEEIVIWSTPQFGFIRLSDAFSTGSSIMPQKKNPDAAE
LVRAKTGRVNGSLVALLTVMKGLPLAYSKDMQEDKEQVFDAAESLELAIAAMTGMIRDVT
IRADRMKAAAGSGYSTATDLADWLVREAGLPFRDAHHVTGRVVALAEQKGCDLADLPLAE
LQAINSAITDKVYGVLTVEASVASRTSFGGTAPSEVRKQIAWWRARN