PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00981 FitnessBrowser__Smeli:SMc00981 (364 amino acids)

SeqID: SMc00981 FitnessBrowser__Smeli:SMc00981
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124028636: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00981 FitnessBrowser__Smeli:SMc00981
MEMPRSFRHFDELDPWRDRQHMLECMSAVAETADVMTFTFRSDKPAWFRYLPGQFVTLEL
PVAAKPVMRTYTLSSSPSRPLSVAVTVKAQPGSIGTRWMFDNLKPGMMLKAFGPLGDFSF
VRHPGEKYLFISAGSGVTPMMSMTRWMADCAPETDVTFISCARRPDDLLFRSELEVLARQ
MPGLNLGFLVEGHEARHGWHGLRGRIDAAKLPMLAPDFLERTVFCCGPEPFMGNVRAMLE
AAGFDMARYHQESFQPAAAPAAEELAIRAGPTADAGAGAARVTFTMSGKEATAVPGQTIL
QTARANGVRIGAACEGGICGTCRVLKIAGDVEMNHNGGILDDEIEEGYILACCSRPTSDV
QIEA