PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01163 FitnessBrowser__Smeli:SMc01163 (376 amino acids)

SeqID: SMc01163 FitnessBrowser__Smeli:SMc01163
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 59802551: Glucose--fructose oxidoreductase precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01163 FitnessBrowser__Smeli:SMc01163
MSGKRRLGIGLIGTGFMGKAHALGFTIAARVFDLPFELDLVSVADVTQEGAEAARGRLGF
RKATADWRELLTDPEIDIIDITTPNLLHKEMALAAFAHGKHVYCEKPLAPTVADCAEMVA
AAEKAGVVTQVGFNYLKNPLIFLASDIIESGEIGEIRSFRGIHAEDFMADESVPWGWRLD
PRSGGGALADIGSHMIACMRHLVGPIRSVLAETVIHIPQRPVARGATATRTVEVDDVTRA
FVRFESGASGSFEASWIATGRKMQHDFEIYGSKGSIVFTQERLNEIRVYYAGDDIRSRGF
RTIWAGPEHPPYGAFCVAPGHQIGFNELKAIEANEFLEAIAKGSKTSTDFREGYEVQKVL
SATYHSARTNEWVEIG