PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01256 FitnessBrowser__Smeli:SMc01256 (466 amino acids)

SeqID: SMc01256 FitnessBrowser__Smeli:SMc01256
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597639: L-serine dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01256 FitnessBrowser__Smeli:SMc01256
MFLSVFDVFKIGIGPSSSHTMGPMSAANRFLDLILSDEWPRPSHAAVGAIKVSLHGSLAH
TGIGHGTGRAVILGLMGERPDLVEPDGMDGIIEQVERTGRITPPGHAGYMFQPKTDLVFD
KKTPLPGHANGMSFSAFDRDGRLLLKRIYYSIGGGFVVTDTELDAMRAQKNKPAGVKVPY
PFATAQQMLDMAARSGLTIAQMKRANEECRMSRDELDAGLDRIWTAMSSCIDRGLSQDGI
MPGGLKVRRRARAIHDKLQEEWRSNKTNPLLANDWLSVYAMAVNEENAAGGRVVTSPTNG
AAGVVPATIRYYLHFHDDADQEGIRDYLLTAAAIGGIIKHNASISGAEVGCQGEVGSASA
MAAAGLAAVMGGTPEQIENAAEIALEHHLGMTCDPVAGLVQVPCIERNALGAVKAVTAAS
LALKGDGKHFVPLDACIETMRQTGADMNEKYKETSTGGLAVNVVEC