PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01345 SMc01345 acetyl-CoA carboxylase biotin carboxylase subunit (449 amino acids)

SeqID: SMc01345 SMc01345 acetyl-CoA carboxylase biotin carboxylase subunit
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600629: probable biotin carboxylase subunit of a transcarboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01345 SMc01345 acetyl-CoA carboxylase biotin carboxylase subunit
MAMISKILIANRGEIALRVLRACKELGIATVAVHSTADSDAMHVRLADESVCIGPPPSRE
SYLNIHQIVAACEITGADAVHPGYGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKIT
AKKTAEELGIPVVPGSDGEVRPENALEIARQIGFPVLIKATAGGGGRGMKVARTEEELEN
AVATARSEAAAAFGNDAVYMEKFLGKPRHIEIQVVGDGEGNAIHLGERDCSLQRRHQKVW
EEANSPALNVEQRMKIGQVCADAMKKLKYRGAGTIEFLYENGEFYFIEMNTRLQVEHPIT
EAITGIDLVHEQIRVASGAGLSAKQEDIVFSGHAIECRINAEDPRTFVPSPGTITHFHAP
GGLGVRVDSGAYQGYRIPPYYDSLIGKLIVHGRTRVECMMRLRRVLDEFVIDGIKTTLPL
FQDLINNQDIANGDYDIHWLEHHLATTSA