PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01496 FitnessBrowser__Smeli:SMc01496 (436 amino acids)

SeqID: SMc01496 FitnessBrowser__Smeli:SMc01496
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01496 FitnessBrowser__Smeli:SMc01496
MNLRTFLLGTCSAVALAGLAQAETLTIATVNNGDMIRMQKLTDDFTSKNPDIQLEWVTLE
ENVLRQRVTTDIATKGGQYDIMTIGTYEVPIWAKQGWLLPLDDLGPEYDVDDLLPAIRSG
LTIDGKLYAAPFYGESSMVMYRKDLFEKAGLTMPDAPTWDFIADAARKITDKGNEIYGIC
LRGKAGWGENMAFLTATANAFGARWFDENWKPQFDQPEWKNALDFYVKLMNDAGPPGASS
NGFNENLSLFQTGKCGMWIDATVAASFVTNPKESTVADKVGFALAPDTGLGKRGNWLWAW
NLAIPAGSQKAESAQKFIAWATGKDYLKLVAEKEGWANVPPGTRTSLYENPEYQKAAPFA
KMTLDSINAADPKNPAVKPVPYVGVQFVAIPEFQGLGTAVGQVFSAALAGQMSVDQALAS
AQQLSTREMTKAGYIK