PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01501 FitnessBrowser__Smeli:SMc01501 (494 amino acids)

SeqID: SMc01501 FitnessBrowser__Smeli:SMc01501
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61252084: Polyol:NADP oxidoreductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01501 FitnessBrowser__Smeli:SMc01501
MATKFSLATLDAVKATAGVPNYGRHDLRAGIVHFGVGNFHRAHQAVYLDDLFNLGRDRDW
AIIGAGVLPSDKVMRDKLEAQDFLTTVVEQDNNRTGAHVTGAMIAYLEPGDTPAIVAQLA
SPLIRIVSLTITEGGYFIDPASGVFDPAHPAIVEDARDPAAPKTVFGLILAGLAERRAKG
IPPFTIMSCDNIPGNGEVTHAAVSGLARLSDPGFADWIDANVAFPNGMVDRITPATGARE
IGIVASQYGIDDAWPVFCEEFKQWVLEDRFPQGRPALEEVGVQFVPDVAPYEHMKIRILN
GGHAAIAYPAALLDIHFVHEAMEEPLIRAFLSKLEHDEIIPVIPPVPDTDLKDYYKLIET
RFSNPKIGDTVARLAQDGSNRQPKFILPSTADRLRRGEDVVGLSLVSALWCRYFAGKSDS
GKEIVFNDANADRLHAAAVAAKDDPMAFLALSDIFGDVAQSDLFRRRFAHALKVLWEKGT
RATLQLYLDGNLGE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory