PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01587 FitnessBrowser__Smeli:SMc01587 (213 amino acids)

SeqID: SMc01587 FitnessBrowser__Smeli:SMc01587
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596029: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01587 FitnessBrowser__Smeli:SMc01587
MLQAGIIPVTHFEQNCTVLFDSETKEGVVVDPGGDVDIILQTIRENGIALKAIWLTHGHI
DHAGGAKELKEALGLDIVGPHKDDLPLLERLEDQAERFGLAMKVQNVVPDRWLEEGDTVS
FGDHVFEVLHCPGHAPGHVVYFNRAQNFAHVGDVLFHGSIGRTDLPGGNHQQLLDSIRDK
ILPLGDNVGFICGHGPGGQIGEERRTNPFLRGL