PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01632 FitnessBrowser__Smeli:SMc01632 (387 amino acids)

SeqID: SMc01632 FitnessBrowser__Smeli:SMc01632
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596607: probable periplasmic spermidine/putrescine-binding protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01632 FitnessBrowser__Smeli:SMc01632
MTKWYRENAPITADKLADELMRLKRGSVSRRHFLGVTGLGLATAVLARQPGLFNSAAYAA
GDLGTQMSIATWPNYHDPATFEAFTAATGVAVEVNVFGSNEEMLAKLQAGGIGWDLFVPT
NYTISTYVKLGLIDELDLSKLPNYDASTENARFTNEGIVEGKTYAVPKNWGTTGIAVNSD
KIKAPVASWKDFFEIAMTEADGRAMVHDYQLTTIGNALVSLGFSFNSIKPEELAKAEELL
IKVKPHLYAINSDYQPSMRATDAWMTMCWTNDGAQLNRDMPEIKFVLGKDGGEIWSDFYA
IPKSAANKPAGYALLDYLMTPANAVKEHIANGAPTTDSRVMKLLPADVTSNKIVYPDEAA
LTPLEFGAAVTLTDPGRAELMARFKSA