PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01666 FitnessBrowser__Smeli:SMc01666 (427 amino acids)

SeqID: SMc01666 FitnessBrowser__Smeli:SMc01666
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 127030: Cystathionine gamma-synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01666 FitnessBrowser__Smeli:SMc01666
MTAPHPSKTHIGNHKLHPETLMLNYGYDPELSEGAVKPPIFLTSTFVFHSAEEGRDFFDF
VSGRREPPAGVGAGLVYSRFNHPNSEIVEDRLAIFERAEAGALFSSGMSAIATTLLAFVR
PGDSILHSQPLYGGTETLLAKTFLNLGVSAVGFADGTDEAAVNAAAEEAMSKGRVSVILI
ETPANPTNSLVDVALVRRIAERIGERQAHRPIVACDNTLLGPVFQHPIEHGADLSLYSLT
KYVGGHSDLIAGAVLGSKALIRQVKALRGSIGTQLDPHSCWMIGRSLETLSVRMEKANDN
ARIVAEFLRDHPKVERIHYLPFHDADTPVGRVFATQCTGAGSTFSFDIAGGQEAAFRFLN
ALQIFKLAVSLGGTESLASHPAAMTHSGVPIEVRARIGVLESTIRLSIGIEHPDDLVADV
ANALTMI