PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01961 FitnessBrowser__Smeli:SMc01961 (317 amino acids)

SeqID: SMc01961 FitnessBrowser__Smeli:SMc01961
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01961 FitnessBrowser__Smeli:SMc01961
MSLQLTGIHHLTAITANAPENLRFYTGTLGLRLVKKTVNQDDTTAYHLFYADGQATPGTD
LTFFDWPVGREGRGTHSISRTGLRVGSAETVRWWKSRFDELEVASGEVAEIDGRASLDFE
DGEGQRFRLVDDGGLAPSHPWERSPVPSEHQIKGLGPITISVPDISNTALVLTRVMNMAE
LRSYPSPDGVGEVHVFSMGDGGPAAELHVAVQPDLPAARQGAGAVHHVAFRAPDVEALHR
WTERLGEFRLPSSGEVERFYFRSLYFREPNGILFEIATDGPGFAVDEPMETLGESLSLPP
FLEPKRAQIEARLKPLE