PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01976 SMc01976 hypothetical protein (390 amino acids)

SeqID: SMc01976 SMc01976 hypothetical protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2500947: Cystathionine gamma-synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01976 SMc01976 hypothetical protein
MNNGLDPFERASLIVAHDESNAFDAVVPPIVQTSLFTFKDYDEMVASYRGERVRPIYTRG
LNPTVRHFEEMLAKLEGAEDAIGFASGMSAISSTVLSFVEPGDRIVAVKHVYPDAFRLFG
THLKRMRVEVTYVDGRDEEAVAKALPGAKLFYMESPTSWVMDTHDVAALAALARRQGIVT
VIDNSWASPVFQQPVSLGVDLVIHSASKYLGGHSDVVAGVVAGSGELIGRIRSEAYPYLG
GKLSPFDAWLLIRGMRTLPVRMKAHERSALAVARRLAEHPLVETVCHPGLGNHLPPGLSG
TSGLFSFIFREGVDVRRFADHLKLFKLGVSWGGHESLIVPGEVVLAQKAEPNSAAAFGIS
PRSVRLHVGLEGTEALWSDLEAAMTAASSG