PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01978 SMc01978 sugar transport system permease ABC transporter protein (311 amino acids)

SeqID: SMc01978 SMc01978 sugar transport system permease ABC transporter protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 126699: Maltose transport system permease protein malF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01978 SMc01978 sugar transport system permease ABC transporter protein
MAYAARHDGLPATRPPLMKRIADASAPYLYTAPALILIVTVMLVPLVLGISYAFRDIQLL
NPFSGGFVGLDHFRALAQDQAFFRSLRNTLWWTGASVFLQFAFGLILALLLDKPFHGRAI
AQALVFLPWAVPSFLAGLNWAWLFNPVVGPLPHWLFALGIMSQPTNILSDPQLAMWGPIV
ANIWWGIPFFAITLLAALQAIPRDLYEAASIDGAGPLQRFLSITLPFLAPTIAITILLRT
VWISNFADLIIVMTNGGPADRTQIVASYIFTQAFKRLDFGYASAIALVLLALLLAYSLLI
VILRQWLLSKD