PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02033 FitnessBrowser__Smeli:SMc02033 (395 amino acids)

SeqID: SMc02033 FitnessBrowser__Smeli:SMc02033
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 731982: D-allose-binding periplasmic protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02033 FitnessBrowser__Smeli:SMc02033
MFKKLAKSSLFAAAATIAVLPMLGAVPAVAQDGENIDVTIGWVPPDITGVFKTATNFFEL
AAEDANKNGFNVKVLTKSPTSPTAFAEQVSIIEDMIQRKVDLIAVSPAEVATIKPALARA
TAAGIPVVVVNLLEPIDGVDVSSYIGFDNTQGAEVSAYSVVDYFGGPGVLGTGDKVDVEP
GTYLDLKFWEDIASKLSAEDKAKIKARGAIIEGVAGGFYSTARLEGFRKVLEQFPGIEIV
GGTCAGDWNREKGTRCAEDILQANQGNLDFIWAASNEMGLGAMLVAGSQNRLETTQDGAA
VGDTKVAIFTNDVTPESVDRIAEGKMIAETTHGFADWGWFGTKFAVELACGLEVPKTFDI
RPRSVYEANARNFYPEPKLEPIDWKTIRANCKKAD