PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02257 FitnessBrowser__Smeli:SMc02257 (274 amino acids)

SeqID: SMc02257 FitnessBrowser__Smeli:SMc02257
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 123172: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02257 FitnessBrowser__Smeli:SMc02257
MTDETTHALAYTPEDLPRKESFLKPHRIVLMLLLAALVVAVAVFMRWDWLPRYLPRLGSG
ILVSLAMLFSTAILGFLLAVPLGLAQVTGPWFFKAPARIFCTVIRGTPLLLQLWLLYYGL
GSLFPQFPAIRQSFLWPYLREAWPYGVAALTVSFAAYEGEVMRGAFAGVPSGELEAARAY
GMGRWTMFRRIWLPRAIHRALPTLNGETVLQLKSTPLVATITVVDVYAVISKVRQETYLT
YEPLLLLAAIYMCLTAILVVAFRYFENRIPTRGA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory