PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02334 FitnessBrowser__Smeli:SMc02334 (515 amino acids)

SeqID: SMc02334 FitnessBrowser__Smeli:SMc02334
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02334 FitnessBrowser__Smeli:SMc02334
MGDTVAAFDLGTGGVKAAIFRPDGTCIAEEVVSYRTFYPSPSCHEQRPEDWWEAICASLR
TLFENTAVKAGDIRAIAVSGHSLGCLPLDENGALLQEFVPIWSDGRAVAEAEDFFTRVDP
DTWYRTTGNGFPAPLYTVFKAMWLRRNAPDIFARTRTIIGTKDYINLRLTGRIATDPSYA
SGTGVYDLKAGRYSAELVEAAGLSRELFPPIVASTDVLGDVLPEIAERLGLFPGVKVVAG
GVDNSCMALGGRTFLEGDAYASMGSSSWITVSASEPLLDDRVRPFVFAHVAPGMFISATS
IFSSGTSFNWVTDTLLPDVKHAAKVAGMDVHDALFRLAGEAPAGARGLIFVPTLGGGTSF
EGGPAVRGGFVGLDLQHGRADILRATLEGVALGLRIALDELRRMTAIGPEMIIVGGGARS
AFWRQVFADVFDCAIVKTRVDQQAAALGAAALAFVGMGLWEDFLPIRTLHVAEGRTEPAP
EARKVYRAALAAYRRAAEQQHELSGALAALREAAT