PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02358 SMc02358 high-affinity branched-chain amino acid ABC transporter ATP-binding protein (235 amino acids)

SeqID: SMc02358 SMc02358 high-affinity branched-chain amino acid ABC transporter ATP-binding protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02358 SMc02358 high-affinity branched-chain amino acid ABC transporter ATP-binding protein
MLDVTDLSVSYGAIRAVRSISFTLRKGELVSLLGANGAGKSSTIKCIAGALKASGGTITL
EGKDITAASPEQVVRAGLATVPETRDVFPDLTVAENLMLGAFIHRRDQAGNRDNLEKLNT
LFPRLAERSKQAAGTLSGGEQQMLVIARALMARPRVLLLDEPSLGLAPAIVERIFEMIET
LKKSGLTILLVEQNVNQALAVADRAFVMRLGAIVASGTAEEIRSTSDLSAHYLGG